Hi,
We want to help you but there is a slight difference in understanding your problem. Dennis has provided the right suggestion.
You will have to switch to DAQmx functions if you want more flexibility in the program.
You can also use the method Will suggests --do not clear you task and let them be there and do not recreate them in your subvi(use first call function)
can you attach the screenshot (printscreen)of your problem for us to have better idea.
Regards
CLAD
Using Labview 5.1,6.1,7.1.8.0