Hi John,
I dont think the version of NI-DAQ that are using is Multi-threaded but it is multithread safe (see link bellow for more info).
Hopefully this link will help with some of your other questions as well. As you your spurious readings have you checked all of the connections with the TBX-68T and the CJC on that terminal block.
http://digital.ni.com/public.nsf/websearch/E1C8492854855FA98625689E0072E832?OpenDocument
Regards
Jon Bowers
Applications Engineer
NIUK