extract highlighted image

[VeMo]

Hello,

I have a program for pattern matching and the patterns found on the original image are highlighted as seen in attached screenshot. Does anyone know how can I extract/save the final image with highlighted rectangles in it? I have the pixel values beside it but when I save the image it saves only the image and there are no rectangles that can be seen in attached screenshot. 

Thanks

[AgiMikeB]

You can merge the overlay into the image and then save it.

Make sure that you create a new colour image to merge it into

Mike