Hi Jay_c,
In brief,
Ref In is the terminal for the USRP device to accept a external reference frequency signal (10Mhz).
PPS In is the terminal for the USRP device to accept a external time base clock source signal (1 pulse per second )
You can refer to this white paper for a detailed description about 8*8 MIMO system.
Please refer to the "Timing and Frequency" section for information specific to your question.
http://www.ni.com/white-paper/14311/en/
I am not sure whether you can use the 5652 signal generator specifically for your application.