Do other instruments work fine? BTW, what is the model of scope you're using and what command are you sending ... "*idn?"?
Are you using a manual to find the commands to send or are you making use of an instrument driver? Let me know and hopefully we can come up with some steps to troubleshoot this.
If it is a command that you're looking up from a manual. Then we should start peeling of the layers between the instrument and your application.
IBIC is pretty low level:
http://www.ni.com/support/gpib/max/ibic.htm
Are you able to get things to work with it. The other thing to check on are the termination settings. That can cause problems if the board is not be configured with the same settings as the instruments, sin
ce this is what let's an instrument know when a command has been completely received.